C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO1/sentrin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503501 SENP6-011 ENSG00000112701 9606 + 6:75666871-75715877 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000503501
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000503501 3.405±0.00 7.009±0.00 3.068±0.00 5.050±0.00 4.174±0.00 5.951±2.82 1.684±0.00 6.162±3.45 7.299±0.82 3.611±1.13 9.831±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PT CIL_0006PT_0001 CGP 6:75291859-75718278
CIL_0006PS CIL_0006PS_0001 CGP 6:75601509-75919537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006508 IEA proteolysis
GO:0008234 IEA cysteine-type peptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176607 Senp6-004 protein_coding Mus_musculus 0 1267
ENSMUST00000165607 Senp6-006 protein_coding Mus_musculus 0 1267
ENSMUST00000175999 Senp6-007 nonsense_mediated_decay Mus_musculus 0 1267
ENSMUST00000164859 Senp6-002 protein_coding Mus_musculus 0 1267
ENSMUST00000037484 Senp6-001 protein_coding Mus_musculus 0 1267
ENSMUST00000175758 Senp6-008 retained_intron Mus_musculus 0 667
ENSMUST00000176527 Senp6-014 protein_coding Mus_musculus 0 664
ENSMUST00000175722 Senp6-012 retained_intron Mus_musculus 0 580
ENSMUST00000176563 Senp6-013 retained_intron Mus_musculus 0 455
ENSMUST00000176360 Senp6-005 protein_coding Mus_musculus 0 315
ENSMUST00000175910 Senp6-015 processed_transcript Mus_musculus 0 228

Loading