C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504293 RPS23-004 ENSG00000186468 9606 - 5:82276060-82277951 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000504293
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000504293 124.928±0.00 46.697±6.66 28.453±0.00 47.720±35.88 52.204±23.73 89.364±0.00 110.208±93.24 127.440±110.27 334.109±254.08 389.910±106.45 81.354±33.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857
CIL_000922 CIL_000922_0001 VISTA 5:81723063-82325864

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051955 Rps23-201 protein_coding Mus_musculus 0 566
ENSMUST00000146939 Rps23-ps2-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000098864 Gm10689-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000118718 Gm15464-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000116115 Rps23-ps-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000165677 Gm8624-002 processed_transcript Mus_musculus 0 532
ENSMUST00000118083 Gm8624-001 transcribed_processed_pseudogene Mus_musculus 0 516
ENSMUST00000099128 Gm5148-003 protein_coding Mus_musculus 0 497
ENSMUST00000108105 Gm5148-002 protein_coding Mus_musculus 0 497
ENSMUST00000079755 Gm5148-001 protein_coding Mus_musculus 0 497
ENSMUST00000086479 C330021F23Rik-201 protein_coding Mus_musculus 0 486
ENSMUST00000151633 C330021F23Rik-002 protein_coding Mus_musculus 0 486
ENSMUST00000136592 C330021F23Rik-001 protein_coding Mus_musculus 0 486
ENSMUST00000168454 Gm9372-201 processed_pseudogene Mus_musculus 0 446
ENSMUST00000119177 Gm11822-001 processed_pseudogene Mus_musculus 0 254

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