C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504315 HOXC6-003 ENSG00000197757 9606 + 12:53990624-54028922 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungENST00000504315
Transcript ID Colon Lung
ENST00000504315 0.350±0.00 0.360±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001711 Hoxc6-001 protein_coding Mus_musculus 0 628
ENSMUST00000173210 Hoxc6-002 processed_transcript Mus_musculus 0 627
ENSMUST00000173421 Hoxc6-003 processed_transcript Mus_musculus 0 422

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