C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO2 pseudogene 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504438 SUMO2P17-001 ENSG00000248278 9606 - 17:48874914-48875198 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartMuscleOvaryPlacentaTestisENST00000504438
Transcript ID Adipose Adrenal Brain Breast Heart Muscle Ovary Placenta Testis
ENST00000504438 0.113±0.00 0.051±0.00 0.382±0.31 0.330±0.00 0.358±0.31 0.046±0.00 0.801±0.86 0.098±0.00 0.141±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 411
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 396
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 377
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 370
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 348
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 337
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 327
ENSMUST00000120751 Gm11556-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 267
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 246
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 246
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 228

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