C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504669 ITGA1-003 ENSG00000213949 9606 + 5:52901779-52952512 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000504669
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000504669 3.184±0.00 0.274±0.00 6.088±0.00 5.649±0.00 1.321±0.00 3.815±0.00 6.859±0.00 4.551±0.00 2.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PM CIL_0004PM_0001 CGP 5:52787896-52959210

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061673 Itga1-201 protein_coding Mus_musculus 0 2274
ENSMUST00000162580 Bscl2-005 retained_intron Mus_musculus 0.0000000003 73
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00003 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00003 57

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