C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 72kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505314 SRP72-002 ENSG00000174780 9606 + 4:56474134-56491565 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLungMuscleENST00000505314
Transcript ID Kidney Lung Muscle
ENST00000505314 6.923±0.00 8.733±0.00 2.156±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0001WO CIL_0001WO_0001 CGP 4:56435741-56503680
CIL_0001WL CIL_0001WL_0001 CGP 4:56466915-56524448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120550 Srp72-002 protein_coding Mus_musculus 0 869
ENSMUST00000101087 Srp72-001 protein_coding Mus_musculus 0 869
ENSMUST00000141873 Srp72-003 retained_intron Mus_musculus 0 586
ENSMUST00000125732 Srp72-007 retained_intron Mus_musculus 0 361
ENSMUST00000146167 Srp72-008 retained_intron Mus_musculus 0 189

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