C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: high mobility group box 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506267 HMGB2-005 ENSG00000164104 9606 - 4:173332889-173334249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENST00000506267
Transcript ID Heart Kidney Liver Muscle
ENST00000506267 1.002±0.00 0.434±0.00 3.206±0.00 1.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007T CIL_00007T_0002 CGP 4:173168753-173335125
CIL_0008VG CIL_0008VG_0001 VISTA 4:173198350-173802625
CIL_0008BZ CIL_0008BZ_0001 VISTA 4:173215162-173815719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067925 Hmgb2-201 protein_coding Mus_musculus 0 503
ENSMUST00000121816 Gm13232-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000122151 Gm13237-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000118441 Gm13160-001 processed_pseudogene Mus_musculus 0 455

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