C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, sigma 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506430 AP3S1-008 ENSG00000177879 9606 + 5:115841958-115913457 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000506430
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000506430 10.149±0.00 18.795±0.00 19.036±0.00 10.283±0.00 4.679±0.00 9.112±0.00 10.197±0.00 11.720±0.00 16.262±0.00 26.525±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0001 CGP 5:115804733-115841858
CIL_0004L6 CIL_0004L6_0001 CGP 5:115828200-115914081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025357 Ap3s1-201 protein_coding Mus_musculus 0 784
ENSMUST00000178107 Ap3s1-ps2-201 processed_pseudogene Mus_musculus 0 660
ENSMUST00000117113 Ap3s1-ps1-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000164712 Gm17149-001 processed_pseudogene Mus_musculus 0 267

Loading