C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506450 RP11-302F12.2-001 ENSG00000228154 9606 + 4:25622777-25623601 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyTestisENST00000506450
Transcript ID Adrenal Brain Colon Heart Kidney Testis
ENST00000506450 0.048±0.00 0.193±0.00 0.022±0.00 0.021±0.00 0.024±0.00 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FA CIL_0002FA_0001 CGP 4:25377213-25678748

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109072 Skp1a-002 protein_coding Mus_musculus 0 455
ENSMUST00000037324 Skp1a-001 protein_coding Mus_musculus 0 455
ENSMUST00000116595 Skp1a-005 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000119054 Gm12988-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000147684 Skp1a-004 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000166537 Skp1a-006 protein_coding Mus_musculus 7e-27 124

Loading