C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small EDRK-rich factor 1B (centromeric)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506542 SERF1B-002 ENSG00000205572 9606 + 5:70025373-70043103 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506542
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506542 0.056±0.00 0.094±0.00 0.037±0.01 0.143±0.00 0.033±0.00 0.081±0.00 0.128±0.08 0.046±0.00 0.179±0.00 0.109±0.10 0.058±0.03 0.015±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0002 CGP 5:70025247-70078522

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107810 Tomm5-001 protein_coding Mus_musculus 0 196
ENSMUST00000129014 Serf1-006 protein_coding Mus_musculus 4.06377e-44 183
ENSMUST00000132053 Serf1-002 protein_coding Mus_musculus 4.06377e-44 183
ENSMUST00000022145 Serf1-001 protein_coding Mus_musculus 4.06377e-44 183
ENSMUST00000142155 Serf1-003 protein_coding Mus_musculus 4.06377e-44 183
ENSMUST00000152286 Serf1-005 protein_coding Mus_musculus 1e-34 152
ENSMUST00000151821 Serf1-004 protein_coding Mus_musculus 1e-34 152
ENSMUST00000107808 Tomm5-003 protein_coding Mus_musculus 0.000000000000003 88
ENSMUST00000107809 Tomm5-002 protein_coding Mus_musculus 0.000000000000003 88
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00003 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00003 55

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