C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507471 TSPAN17-006 ENSG00000048140 9606 + 5:176647620-176657056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000507471
Transcript ID Kidney
ENST00000507471 2.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002NB CIL_0002NB_0001 CGP 5:176630682-176659054
CIL_0002NA CIL_0002NA_0001 CGP 5:176647387-176880895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163796 Tspan17-007 protein_coding Mus_musculus 0 776
ENSMUST00000026993 Tspan17-001 protein_coding Mus_musculus 0 726
ENSMUST00000145574 Tspan17-003 protein_coding Mus_musculus 0 682
ENSMUST00000131692 Tspan17-002 protein_coding Mus_musculus 0 682
ENSMUST00000099503 Tspan17-009 protein_coding Mus_musculus 0 645
ENSMUST00000130568 Tspan17-005 protein_coding Mus_musculus 0 584
ENSMUST00000163915 Tspan17-006 protein_coding Mus_musculus 0 348
ENSDART00000075178 tspan5a-201 protein_coding Danio_rerio 0 315
ENSDART00000126739 tspan5a-202 protein_coding Danio_rerio 0 315
ENSMUST00000139574 Tspan17-004 retained_intron Mus_musculus 0 302
ENSDART00000101132 TSPAN17-201 protein_coding Danio_rerio 0 276
ENSMUST00000171859 Tspan17-008 protein_coding Mus_musculus 0 255

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