C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508164 TSPAN17-003 ENSG00000048140 9606 + 5:176647502-176659051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000508164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000508164 4.901±0.00 3.245±0.00 0.147±0.00 2.846±2.17 3.370±2.49 2.698±1.32 2.807±0.00 4.486±3.65 1.769±0.00 1.670±1.11 5.317±0.00 3.323±2.22 7.378±3.42 6.196±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002NB CIL_0002NB_0001 CGP 5:176630682-176659054
CIL_0002NA CIL_0002NA_0001 CGP 5:176647387-176880895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 NAS ubiquitin ligase complex
GO:0004842 NAS ubiquitin-protein transferase activity
GO:0016021 IEA integral component of membrane
GO:0016567 NAS protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0072594 IDA establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131692 Tspan17-002 protein_coding Mus_musculus 0 1225
ENSMUST00000026993 Tspan17-001 protein_coding Mus_musculus 0 1223
ENSMUST00000099503 Tspan17-009 protein_coding Mus_musculus 0 1066
ENSMUST00000130568 Tspan17-005 protein_coding Mus_musculus 0 778
ENSMUST00000145574 Tspan17-003 protein_coding Mus_musculus 0 712
ENSMUST00000163796 Tspan17-007 protein_coding Mus_musculus 0 634
ENSDART00000075178 tspan5a-201 protein_coding Danio_rerio 0 453
ENSDART00000126739 tspan5a-202 protein_coding Danio_rerio 0 453
ENSDART00000101132 TSPAN17-201 protein_coding Danio_rerio 0 353
ENSMUST00000171859 Tspan17-008 protein_coding Mus_musculus 0 350
ENSMUST00000139574 Tspan17-004 retained_intron Mus_musculus 0 307
ENSMUST00000163915 Tspan17-006 protein_coding Mus_musculus 6e-34 150

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