C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenomatous polyposis coli
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508624 APC-003 ENSG00000134982 9606 + 5:112737885-112842755 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverMuscleOvaryENST00000508624
Transcript ID Breast Kidney Liver Muscle Ovary
ENST00000508624 1.598±0.00 1.370±0.00 1.825±0.00 1.336±0.00 0.863±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KL CIL_0005KL_0002 CGP 5:112142441-112846239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IEA mitotic cytokinesis
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007026 IEA negative regulation of microtubule depolymerization
GO:0007050 IEA cell cycle arrest
GO:0008013 IEA beta-catenin binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0016477 IEA cell migration
GO:0030178 IEA negative regulation of Wnt signaling pathway
GO:0043065 IEA positive regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079362 Apc-001 protein_coding Mus_musculus 0 7391
ENSMUST00000115781 Apc-201 protein_coding Mus_musculus 0 7389
ENSMUST00000171187 Apc-002 protein_coding Mus_musculus 0 3565
ENSMUST00000165590 Apc-006 nonsense_mediated_decay Mus_musculus 0 3044
ENSMUST00000066133 Apc-005 protein_coding Mus_musculus 0 1035
ENSMUST00000170023 Apc-003 retained_intron Mus_musculus 0 979
ENSMUST00000167136 Apc-007 processed_transcript Mus_musculus 0 582
ENSMUST00000170195 Apc-004 retained_intron Mus_musculus 0 350
ENSDART00000044432 apc-201 protein_coding Danio_rerio 2e-22 113
ENSDART00000149956 apc-001 protein_coding Danio_rerio 2e-22 113

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