C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stereocilin pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509801 STRCP1-001 ENSG00000166763 9606 - 15:43699488-43718184 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000509801
Transcript ID Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000509801 0.022±0.00 0.121±0.00 0.010±0.00 0.026±0.00 0.027±0.00 0.028±0.02 0.044±0.03 0.017±0.00 0.267±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038389 Strc-001 protein_coding Mus_musculus 0 4449
ENSMUST00000149219 Strc-002 retained_intron Mus_musculus 0 931
ENSMUST00000129136 Strc-004 nonsense_mediated_decay Mus_musculus 0 604
ENSMUST00000134443 Strc-003 processed_transcript Mus_musculus 0 466
ENSMUST00000150332 Strc-005 retained_intron Mus_musculus 0 416

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