C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509910 ATG12-001 ENSG00000145782 9606 - 5:115828200-115841858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000509910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000509910 3.746±0.00 4.061±0.00 1.621±0.00 6.267±1.31 3.590±0.38 3.854±1.14 2.007±0.97 2.879±0.63 4.055±1.41 3.138±1.02 1.121±0.09 3.848±1.11 3.528±0.50 4.190±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0001 CGP 5:115804733-115841858
CIL_0004L6 CIL_0004L6_0001 CGP 5:115828200-115914081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 ISS:IEA autophagic vacuole assembly
GO:0000422 IBA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006501 IBA C-terminal protein lipidation
GO:0006914 IEA autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0016020 IEA membrane
GO:0019776 IBA Atg8 ligase activity
GO:0032480 TAS negative regulation of type I interferon production
GO:0034045 ISS pre-autophagosomal structure membrane
GO:0034274 IBA Atg12-Atg5-Atg16 complex
GO:0043234 IEA protein complex
GO:0044804 IBA nucleophagy
GO:0045087 TAS innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035648 Atg12-201 protein_coding Mus_musculus 0 473
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000002 60
ENSMUST00000081104 Timm17a-001 protein_coding Mus_musculus 0.00002 57

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