C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin-related family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510636 CDHR2-001 ENSG00000074276 9606 + 5:176542511-176595974 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryENST00000510636
Transcript ID Breast Liver Ovary
ENST00000510636 0.018±0.00 0.099±0.00 0.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000OY CIL_0000OY_0002 CGP 5:176526697-176595974
CIL_0002N6 CIL_0002N6_0001 CGP 5:176542511-176610133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IDA cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0030054 IEA cell junction
GO:0030308 IDA negative regulation of cell growth
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037145 Cdhr2-001 protein_coding Mus_musculus 0 2470
ENSMUST00000135343 Gprin1-001 protein_coding Mus_musculus 1e-18 100
ENSMUST00000099506 Gprin1-002 protein_coding Mus_musculus 1e-17 97

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