C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510646 HNRNPA1P13-001 ENSG00000213568 9606 + 5:136428892-136429854 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleTestisENST00000510646
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Testis
ENST00000510646 0.107±0.00 0.056±0.00 0.072±0.00 0.014±0.00 0.193±0.00 0.127±0.06 0.013±0.00 0.082±0.00 0.161±0.00 0.028±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P0 CIL_0005P0_0001 CGP 5:136213320-137598379

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1127
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1127
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1094
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1061
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1061
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1024
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 889
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 889
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 806
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 758
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 2e-35 154
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 592

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