C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510871 RBM47-007 ENSG00000163694 9606 - 4:40423681-40629864 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000510871
Transcript ID Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000510871 0.232±0.00 1.030±0.00 0.196±0.00 1.790±0.00 0.122±0.00 3.034±1.52 2.131±0.39 0.890±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0001 CGP 4:40423267-40809985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132606 Rbm47-007 retained_intron Mus_musculus 0 1554
ENSMUST00000094757 Rbm47-004 protein_coding Mus_musculus 0 1554
ENSMUST00000113725 Rbm47-006 protein_coding Mus_musculus 0 1554
ENSMUST00000167950 Rbm47-201 protein_coding Mus_musculus 0 1443
ENSMUST00000094756 Rbm47-005 protein_coding Mus_musculus 0 1443
ENSMUST00000113726 Rbm47-001 protein_coding Mus_musculus 0 1443
ENSMUST00000113724 Rbm47-002 protein_coding Mus_musculus 0 1437
ENSMUST00000145625 Rbm47-011 protein_coding Mus_musculus 0 617
ENSMUST00000127275 Rbm47-003 protein_coding Mus_musculus 5e-27 128
ENSMUST00000131838 Rbm47-010 protein_coding Mus_musculus 3e-24 119

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