C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeodomain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511837 PITX2-006 ENSG00000164093 9606 - 4:110618209-110642123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartOvaryTestisENST00000511837
Transcript ID Breast Colon Heart Ovary Testis
ENST00000511837 0.167±0.00 0.481±0.00 0.021±0.00 0.362±0.00 0.391±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000917 CIL_000917_0001 VISTA 4:110309018-110909617
CIL_000912 CIL_000912_0001 VISTA 4:110357117-110957671
CIL_0007ZJ CIL_0007ZJ_0001 VISTA 4:110448103-111050012
CIL_0007RD CIL_0007RD_0001 VISTA 4:110613299-111214576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174661 Pitx2-002 protein_coding Mus_musculus 0 1234
ENSMUST00000172645 Pitx2-006 protein_coding Mus_musculus 0 1099
ENSMUST00000042587 Pitx2-003 protein_coding Mus_musculus 0 965
ENSMUST00000106382 Pitx2-001 protein_coding Mus_musculus 0 965
ENSMUST00000029657 Pitx2-005 protein_coding Mus_musculus 0 684
ENSMUST00000174623 Pitx2-004 protein_coding Mus_musculus 0 287
ENSMUST00000187145 Pitx2-007 retained_intron Mus_musculus 0 287
ENSMUST00000173645 Pitx2-008 protein_coding Mus_musculus 0 270

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