C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: paired-like homeodomain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511990 PITX2-007 ENSG00000164093 9606 - 4:110618586-110642016 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000511990
Transcript ID Muscle
ENST00000511990 3.916±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000917 CIL_000917_0001 VISTA 4:110309018-110909617
CIL_000912 CIL_000912_0001 VISTA 4:110357117-110957671
CIL_0007ZJ CIL_0007ZJ_0001 VISTA 4:110448103-111050012
CIL_0007RD CIL_0007RD_0001 VISTA 4:110613299-111214576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106382 Pitx2-001 protein_coding Mus_musculus 0 510
ENSMUST00000042587 Pitx2-003 protein_coding Mus_musculus 0 442
ENSMUST00000172645 Pitx2-006 protein_coding Mus_musculus 0 440
ENSMUST00000174661 Pitx2-002 protein_coding Mus_musculus 0 440
ENSMUST00000174623 Pitx2-004 protein_coding Mus_musculus 0 289
ENSMUST00000187145 Pitx2-007 retained_intron Mus_musculus 0 289

Loading