C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512920 NPM1P41-001 ENSG00000248543 9606 - 4:82010665-82013095 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungOvaryENST00000512920
Transcript ID Heart Lung Ovary
ENST00000512920 0.011±0.00 0.011±0.00 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000086 CIL_000086_0002 CGP 4:81087370-82044244

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 501
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 307
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 235
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 9e-28 128
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 8.96831e-44 182
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 3e-34 148
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 302

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