C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC31 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513858 SEC31A-009 ENSG00000138674 9606 - 4:82818661-82891153 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaENST00000513858
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000513858 17.511±0.00 7.126±0.00 8.280±0.00 7.994±0.00 10.725±0.00 3.558±0.00 15.282±0.00 16.641±0.00 24.166±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006888 NAS ER to Golgi vesicle-mediated transport
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0015031 IEA protein transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030120 IDA vesicle coat
GO:0030127 NAS COPII vesicle coat
GO:0030134 IDA ER to Golgi transport vesicle
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0048306 IPI calcium-dependent protein binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051592 IDA response to calcium ion
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182886 Sec31a-002 protein_coding Mus_musculus 0 2867
ENSMUST00000094578 Sec31a-001 protein_coding Mus_musculus 0 1840
ENSMUST00000182988 Sec31a-004 protein_coding Mus_musculus 0 1690
ENSMUST00000182812 Sec31a-005 protein_coding Mus_musculus 0 1098
ENSMUST00000182433 Sec31a-011 protein_coding Mus_musculus 0 881
ENSMUST00000182569 Sec31a-003 retained_intron Mus_musculus 0 695
ENSMUST00000182850 Sec31a-008 processed_transcript Mus_musculus 0 523
ENSMUST00000183247 Sec31a-010 protein_coding Mus_musculus 0 459
ENSMUST00000182002 Sec31a-007 protein_coding Mus_musculus 0 326

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