C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK6 homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515820 NKX6-1-002 ENSG00000163623 9606 - 4:84491987-84496950 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaTestisENST00000515820
Transcript ID Muscle Ovary Placenta Testis
ENST00000515820 0.001±0.00 0.171±0.00 0.019±0.00 0.148±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J7 CIL_0006J7_0001 CGP 4:83535914-84498450
CIL_0007QY CIL_0007QY_0001 VISTA 4:84024438-84625402
CIL_0006J6 CIL_0006J6_0001 CGP 4:84491987-84651338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044125 Nkx6-1-001 protein_coding Mus_musculus 0 490
ENSMUST00000071588 Nkx6-3-001 protein_coding Mus_musculus 2e-27 128

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