C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin (nucleolar phosphoprotein B23, numatrin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519955 NPM1-011 ENSG00000181163 9606 + 5:171400786-171405732 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 259
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 259
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 257
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 243
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 215
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 4.06377e-44 182
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 3e-40 169
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 2e-18 97

Loading