C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520133 COL13A1-015 ENSG00000197467 9606 + 10:69802424-69958701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverLungOvaryPlacentaENST00000520133
Transcript ID Bladder Liver Lung Ovary Placenta
ENST00000520133 0.046±0.00 0.020±0.00 0.443±0.00 0.450±0.26 0.517±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0001 VISTA 10:69276019-69878973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001763 ISS morphogenesis of a branching structure
GO:0001958 ISS endochondral ossification
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005600 TAS collagen type XIII trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0007160 IPI cell-matrix adhesion
GO:0008201 IDA heparin binding
GO:0016337 IEP single organismal cell-cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 IEA cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105453 Col13a1-004 protein_coding Mus_musculus 0 1417
ENSMUST00000051826 Col13a1-002 retained_intron Mus_musculus 0 1186
ENSMUST00000105454 Col13a1-001 protein_coding Mus_musculus 0 974
ENSMUST00000105452 Col13a1-005 protein_coding Mus_musculus 0 974
ENSMUST00000105451 Col13a1-003 processed_transcript Mus_musculus 0 765
ENSMUST00000145469 Col13a1-006 protein_coding Mus_musculus 0 477
ENSMUST00000153120 Col13a1-007 retained_intron Mus_musculus 0 219

Loading