C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CREB3 regulatory factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520464 CREBRF-005 ENSG00000164463 9606 + 5:173056390-173124581 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyENST00000520464
Transcript ID Colon Kidney
ENST00000520464 0.705±0.00 0.404±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_00023T CIL_00023T_0001 CGP 5:172983757-173139284
CIL_00023P CIL_00023P_0001 CGP 5:173056352-173164387

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062519 Crebrf-001 protein_coding Mus_musculus 0 2037
ENSMUST00000142539 Crebrf-002 protein_coding Mus_musculus 0 1775
ENSMUST00000144221 Crebrf-003 protein_coding Mus_musculus 0 1526
ENSMUST00000132972 Crebrf-005 retained_intron Mus_musculus 0 448
ENSMUST00000151681 Crebrf-004 protein_coding Mus_musculus 0 322

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