C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome c oxidase subunit VIc
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520517 COX6C-009 ENSG00000164919 9606 - 8:99874996-99893707 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLungOvaryTestisENST00000520517
Transcript ID Adipose Bladder Brain Breast Lung Ovary Testis
ENST00000520517 21.416±0.00 15.497±0.00 57.090±0.00 22.059±0.00 48.509±0.00 33.985±0.00 17.963±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026G CIL_00026G_0001 CGP 8:98944403-99877580
CIL_0006JN CIL_0006JN_0001 CGP 8:99013266-99894062
CIL_0008YK CIL_0008YK_0001 VISTA 8:99368181-99969581
CIL_0006JM CIL_0006JM_0001 CGP 8:99873200-100131268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004129 IEA cytochrome-c oxidase activity
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0006091 TAS generation of precursor metabolites and energy
GO:0016021 IEA integral component of membrane
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153512 Cox6c-004 protein_coding Mus_musculus 0 237
ENSMUST00000014457 Cox6c-001 protein_coding Mus_musculus 0 237
ENSMUST00000127999 Cox6c-002 retained_intron Mus_musculus 6.99949e-42 174
ENSMUST00000149263 Gm6265-001 processed_pseudogene Mus_musculus 3e-40 169
ENSMUST00000181423 Gm16399-001 processed_pseudogene Mus_musculus 7e-37 158

Loading