C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521638 HNRNPA3P7-001 ENSG00000253119 9606 - 5:154337471-154338452 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000521638
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000521638 0.107±0.00 0.112±0.00 0.073±0.04 0.215±0.07 0.052±0.00 0.017±0.00 0.028±0.00 0.101±0.00 0.027±0.00 0.012±0.00 0.146±0.00 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0001 VISTA 5:153896309-154498445
CIL_00094E CIL_00094E_0001 VISTA 5:153896347-154498404
CIL_0001UE CIL_0001UE_0001 CGP 5:154038906-154420984
CIL_0001UJ CIL_0001UJ_0001 CGP 5:154190730-154461054
CIL_00099I CIL_00099I_0001 VISTA 5:154192067-154792416
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1002
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1002
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 255
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 3e-28 130

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