C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521759 RANBP17-010 ENSG00000204764 9606 + 5:171143267-171299177 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000521759
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000521759 0.299±0.00 0.162±0.00 0.218±0.00 0.063±0.00 0.059±0.00 0.288±0.00 0.067±0.00 0.300±0.00 0.373±0.00 0.344±0.19 2.981±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102815 Ranbp17-001 protein_coding Mus_musculus 0 1899
ENSMUST00000129179 Ranbp17-002 nonsense_mediated_decay Mus_musculus 0 442
ENSMUST00000154808 Ranbp17-004 processed_transcript Mus_musculus 0 272

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