C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | synaptopodin | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000522122  |
SYNPO-003 |
ENSG00000171992 |
9606 | + |
5:150617644-150652334  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00091Q | CIL_00091Q_0001 | VISTA | 5:150006686-150608670 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003779 | ISS | actin binding |
| GO:0005515 | IPI | protein binding |
| GO:0005737 | IEA | cytoplasm |
| GO:0005923 | IEA | tight junction |
| GO:0015629 | ISS | actin cytoskeleton |
| GO:0032233 | IEA | positive regulation of actin filament bundle assembly |
| GO:0043197 | TAS | dendritic spine |
| GO:0045211 | IEA | postsynaptic membrane |
| GO:0051492 | ISS | regulation of stress fiber assembly |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000143275
|
Synpo-008 | protein_coding | Mus_musculus | 0 | 1940 |
|
ENSMUST00000130360
|
Synpo-002 | protein_coding | Mus_musculus | 0 | 1940 |
|
ENSMUST00000115318
|
Synpo-005 | protein_coding | Mus_musculus | 0 | 1766 |
|
ENSMUST00000155195
|
Synpo-004 | protein_coding | Mus_musculus | 0 | 1766 |
|
ENSMUST00000130044
|
Synpo-003 | protein_coding | Mus_musculus | 0 | 1766 |
|
ENSMUST00000097566
|
Synpo-001 | protein_coding | Mus_musculus | 0 | 1766 |
|
ENSMUST00000123288
|
Synpo-011 | protein_coding | Mus_musculus | 0 | 348 |
|
ENSMUST00000160395
|
Synpo-012 | processed_transcript | Mus_musculus | 0 | 248 |
