C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522841 SMG1P3-002 ENSG00000180747 9606 - 16:21463205-21520444 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000522841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000522841 0.321±0.00 0.679±0.00 2.234±0.00 0.759±0.41 1.626±1.34 1.695±1.51 0.388±0.25 0.633±0.45 1.551±1.48 2.069±1.52 0.821±0.43 0.669±0.65 0.148±0.05 0.772±0.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179331 Smg1-005 protein_coding Mus_musculus 0 2194
ENSMUST00000032891 Smg1-001 protein_coding Mus_musculus 0 1953
ENSMUST00000180009 Smg1-003 retained_intron Mus_musculus 0 1168
ENSMUST00000179047 Smg1-002 protein_coding Mus_musculus 0 883
ENSMUST00000045557 Slc7a5-001 protein_coding Mus_musculus 0 601
ENSMUST00000179847 Smg1-004 retained_intron Mus_musculus 0 505

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