C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000523223 RP11-546B8.3-001 ENSG00000253213 9606 + 5:171251866-171252982 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLungOvaryPlacentaTestisENST00000523223
Transcript ID Adrenal Brain Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000523223 0.009±0.00 0.261±0.00 0.167±0.00 0.017±0.00 0.036±0.00 0.070±0.00 0.055±0.03 0.063±0.00 0.227±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_0007NP CIL_0007NP_0001 UCNEbase 5:170990945-171323112
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085614 Usp12-001 protein_coding Mus_musculus 0 924
ENSMUST00000174341 Gm8902-001 processed_pseudogene Mus_musculus 0 839
ENSMUST00000138202 Usp12-002 processed_transcript Mus_musculus 0 580
ENSMUST00000124009 Usp12-003 processed_transcript Mus_musculus 0 501
ENSMUST00000117395 Gm12636-001 processed_pseudogene Mus_musculus 0 436

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