C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524364 RANBP17-018 ENSG00000204764 9606 + 5:171143321-171213682 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleENST00000524364
Transcript ID Brain Breast Colon Heart Lung Muscle
ENST00000524364 4.602±0.00 2.130±0.00 3.607±0.00 0.131±0.00 5.552±0.00 0.304±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102815 Ranbp17-001 protein_coding Mus_musculus 0 769
ENSMUST00000129179 Ranbp17-002 nonsense_mediated_decay Mus_musculus 0 736
ENSMUST00000154808 Ranbp17-004 processed_transcript Mus_musculus 0 564

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