C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000525981 RPL27A-010 ENSG00000166441 9606 + 11:8683215-8685847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonTestisENST00000525981
Transcript ID Adipose Adrenal Brain Breast Colon Testis
ENST00000525981 500.709±0.00 1042.250±0.00 121.331±0.00 516.583±0.00 592.338±0.00 376.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 211
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 211
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 196
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 193
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 1.4013e-45 185
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 1.96182e-44 182
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 7.9874e-44 180
ENSMUST00000149143 Rpl27a-004 retained_intron Mus_musculus 2e-39 165
ENSMUST00000080866 Gm5453-201 processed_pseudogene Mus_musculus 8e-39 163
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 8e-39 163
ENSMUST00000119886 Gm13038-001 processed_pseudogene Mus_musculus 1e-31 139
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 6e-30 134
ENSMUST00000174303 Rpl27a-006 retained_intron Mus_musculus 2e-20 102
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 0.00000000000002 82

Loading