C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome/scleroderma autoantigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000526433 SSSCA1-007 ENSG00000173465 9606 + 11:65570682-65573942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartMusclePlacentaENST00000526433
Transcript ID Adipose Brain Breast Heart Muscle Placenta
ENST00000526433 6.832±0.00 3.473±1.80 7.191±0.00 7.180±0.00 1.433±0.00 5.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923
CIL_0003XG CIL_0003XG_0002 CGP 11:65570430-65574198

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160852 Sssca1-006 nonsense_mediated_decay Mus_musculus 0 422
ENSMUST00000099955 Fam89b-001 protein_coding Mus_musculus 0 422
ENSMUST00000116558 Fam89b-002 protein_coding Mus_musculus 0 422

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