C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BCL2-associated transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527613 BCLAF1-008 ENSG00000029363 9606 - 6:136258593-136289795 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000527613
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000527613 5.234±0.00 5.988±0.00 1.662±0.00 5.064±1.12 3.746±0.62 3.397±0.00 2.426±1.83 4.079±0.00 3.399±2.30 5.123±0.50 3.647±0.00 6.957±3.37 3.490±2.21 9.585±2.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000879 CIL_000879_0001 VISTA 6:135802414-136405223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006915 IEA apoptotic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:2001022 IEA positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186100 Bclaf1-001 nonsense_mediated_decay Mus_musculus 0 3712
ENSMUST00000190156 Bclaf1-009 nonsense_mediated_decay Mus_musculus 0 3664
ENSMUST00000092678 Bclaf1-201 protein_coding Mus_musculus 0 3227
ENSMUST00000043881 Bclaf1-002 protein_coding Mus_musculus 0 3227
ENSMUST00000185800 Bclaf1-008 protein_coding Mus_musculus 0 3169
ENSMUST00000191438 Bclaf1-005 nonsense_mediated_decay Mus_musculus 0 1792
ENSMUST00000188546 Bclaf1-004 retained_intron Mus_musculus 0 970
ENSMUST00000120619 Gm15719-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000187338 Bclaf1-006 retained_intron Mus_musculus 0 309
ENSMUST00000191143 Bclaf1-003 retained_intron Mus_musculus 0 303

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