C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 4 (inducible form)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527718 PABPC4-021 ENSG00000090621 9606 - 1:39563614-39568857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungMuscleENST00000527718
Transcript ID Brain Breast Colon Liver Lung Muscle
ENST00000527718 6.307±0.00 19.165±0.00 8.246±0.00 15.431±0.00 9.374±0.00 54.773±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106243 Pabpc4-003 protein_coding Mus_musculus 0 828
ENSMUST00000080178 Pabpc4-001 protein_coding Mus_musculus 0 721
ENSMUST00000117060 Gm11841-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000117339 Gm12626-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000140182 Gm12612-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000120647 Gm11839-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000119791 Gm12620-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000081204 Gm10110-201 protein_coding Mus_musculus 0 671
ENSMUST00000119849 Gm12623-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000078734 Pabpc4-002 protein_coding Mus_musculus 0 649
ENSMUST00000183940 Pabpc4-005 nonsense_mediated_decay Mus_musculus 0 649
ENSMUST00000106241 Pabpc4-004 protein_coding Mus_musculus 0 649
ENSMUST00000119395 Gm5466-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000124991 Pabpc4-006 processed_transcript Mus_musculus 0 226

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