C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528062 RBM39-015 ENSG00000131051 9606 - 20:35703898-35742238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000528062
Transcript ID Colon
ENST00000528062 10.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005815 IDA microtubule organizing center
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015630 IDA microtubule cytoskeleton
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 2353
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 2237
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 2237
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 2058
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 2058
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 1411
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 1170
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 913
ENSMUST00000146288 Rbm39-021 protein_coding Mus_musculus 0 883
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 765
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 669
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 0 590
ENSMUST00000109584 Rbm39-022 protein_coding Mus_musculus 0 422
ENSMUST00000147098 Rbm39-013 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000128243 Rbm39-012 retained_intron Mus_musculus 0 348
ENSMUST00000132929 Rbm39-007 retained_intron Mus_musculus 0 340
ENSMUST00000146549 Rbm39-008 nonsense_mediated_decay Mus_musculus 0 340
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 339
ENSMUST00000137566 Rbm39-009 nonsense_mediated_decay Mus_musculus 0 335
ENSMUST00000152919 Rbm39-005 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000137340 Rbm39-004 retained_intron Mus_musculus 0 315
ENSMUST00000138381 Rbm39-015 retained_intron Mus_musculus 0 315
ENSMUST00000140001 Rbm39-010 processed_transcript Mus_musculus 0 305
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000154677 Rbm39-024 nonsense_mediated_decay Mus_musculus 6e-24 117
ENSMUST00000120746 Ncald-002 protein_coding Mus_musculus 0.0002 53
ENSMUST00000119730 Ncald-003 protein_coding Mus_musculus 0.0002 53
ENSMUST00000132423 Ncald-011 processed_transcript Mus_musculus 0.00004 53

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