C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 89, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530349 FAM89B-004 ENSG00000176973 9606 + 11:65572528-65574192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000530349
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000530349 17.037±0.00 31.332±0.00 13.329±0.00 23.846±0.00 33.165±0.00 10.765±0.00 21.441±0.00 6.453±3.39 24.602±24.07 27.586±23.79 37.833±0.22 15.376±5.53 9.659±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923
CIL_0003XG CIL_0003XG_0002 CGP 11:65570430-65574198
CIL_0004VX CIL_0004VX_0002 CGP 11:65572349-65592650

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001222 ISS transcription corepressor binding
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0030512 ISS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0060392 ISS negative regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160852 Sssca1-006 nonsense_mediated_decay Mus_musculus 0 750
ENSMUST00000099955 Fam89b-001 protein_coding Mus_musculus 0 750
ENSMUST00000116558 Fam89b-002 protein_coding Mus_musculus 0 704

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