C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530631 PRPH-003 ENSG00000135406 9606 + 12:49297121-49298648 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungTestisENST00000530631
Transcript ID Adipose Adrenal Brain Breast Colon Lung Testis
ENST00000530631 1.437±0.00 1.656±0.00 0.845±0.00 1.268±0.00 1.720±0.00 1.155±0.00 19.928±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686
CIL_00009Q CIL_00009Q_0001 CGP 12:49293252-49331731

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047104 Prph-202 protein_coding Mus_musculus 0 628
ENSMUST00000024249 Prph-201 protein_coding Mus_musculus 0 623
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 7e-29 132
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 7e-29 132
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 2e-20 104
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 7e-19 99
ENSMUST00000022638 Nefm-001 protein_coding Mus_musculus 0.000000000000002 88
ENSMUST00000179022 Lmnb2-201 protein_coding Mus_musculus 0.00000000000002 84
ENSMUST00000105332 Lmnb2-002 protein_coding Mus_musculus 0.00000000000002 84
ENSMUST00000057623 Lmnb2-001 protein_coding Mus_musculus 0.00000000000002 84
ENSMUST00000111089 Nefm-002 protein_coding Mus_musculus 0.0000000000003 81

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