C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | ribosomal protein L27a | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000530913  |
RPL27A-011 |
ENSG00000166441 |
9606 | + |
11:8684259-8685848  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008Q2 | CIL_0008Q2_0001 | VISTA | 11:8432154-9033661 |
| CIL_00049H | CIL_00049H_0001 | CGP | 11:8612037-8714759 |
| CIL_00049E | CIL_00049E_0001 | CGP | 11:8682411-8910951 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003735 | IEA | structural constituent of ribosome |
| GO:0005840 | IEA | ribosome |
| GO:0006412 | IEA | translation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000053298
|
Rpl27a-005 | retained_intron | Mus_musculus | 0 | 425 |
|
ENSMUST00000143107
|
Rpl27a-001 | protein_coding | Mus_musculus | 0 | 425 |
|
ENSMUST00000077389
|
Gm7536-201 | protein_coding | Mus_musculus | 0 | 411 |
|
ENSMUST00000117531
|
Gm14044-001 | processed_pseudogene | Mus_musculus | 0 | 401 |
|
ENSMUST00000084017
|
Gm5908-201 | processed_pseudogene | Mus_musculus | 0 | 401 |
|
ENSMUST00000118191
|
Gm8213-001 | processed_pseudogene | Mus_musculus | 0 | 396 |
|
ENSMUST00000170338
|
RP23-323H18.3-001 | processed_pseudogene | Mus_musculus | 0 | 396 |
|
ENSMUST00000084199
|
Gm6378-201 | processed_pseudogene | Mus_musculus | 0 | 396 |
|
ENSMUST00000122360
|
Gm13981-001 | processed_pseudogene | Mus_musculus | 0 | 390 |
|
ENSMUST00000122416
|
Gm15727-001 | processed_pseudogene | Mus_musculus | 0 | 383 |
|
ENSMUST00000121260
|
Gm14407-001 | processed_pseudogene | Mus_musculus | 0 | 379 |
|
ENSMUST00000122320
|
Gm14439-001 | processed_pseudogene | Mus_musculus | 0 | 366 |
|
ENSMUST00000120082
|
Gm15798-001 | processed_pseudogene | Mus_musculus | 0 | 357 |
|
ENSMUST00000189120
|
RP24-158I9.1-001 | processed_pseudogene | Mus_musculus | 0 | 337 |
|
ENSMUST00000119351
|
Gm5054-001 | processed_pseudogene | Mus_musculus | 0 | 335 |
|
ENSMUST00000119886
|
Gm13038-001 | processed_pseudogene | Mus_musculus | 0 | 322 |
|
ENSMUST00000117666
|
Gm12218-001 | processed_pseudogene | Mus_musculus | 0 | 294 |
|
ENSMUST00000120046
|
Gm5942-001 | processed_pseudogene | Mus_musculus | 0 | 285 |
|
ENSMUST00000122335
|
Gm11243-001 | processed_pseudogene | Mus_musculus | 0 | 263 |
|
ENSMUST00000185704
|
RP23-122B3.2-001 | processed_pseudogene | Mus_musculus | 0 | 230 |
|
ENSMUST00000119552
|
Gm13804-001 | processed_pseudogene | Mus_musculus | 5.60519e-45 | 185 |
|
ENSMUST00000132877
|
Rpl27a-002 | retained_intron | Mus_musculus | 8e-28 | 128 |
