C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA-binding region (RNP1, RRM) containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533099 RNPC3-003 ENSG00000185946 9606 + 1:103525699-103555112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000533099
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000533099 0.914±0.00 2.534±0.00 1.616±0.00 0.907±0.00 1.045±0.00 3.029±0.00 0.228±0.00 0.658±0.00 1.650±0.00 0.231±0.03 1.476±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Z CIL_00072Z_0002 CGP 1:102876467-103555239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IC RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092154 Rnpc3-001 protein_coding Mus_musculus 0 1921
ENSMUST00000106535 Rnpc3-002 protein_coding Mus_musculus 0 1903
ENSMUST00000106536 Rnpc3-003 protein_coding Mus_musculus 0 1760
ENSMUST00000153853 Rnpc3-005 protein_coding Mus_musculus 0 1635
ENSMUST00000123232 Rnpc3-006 processed_transcript Mus_musculus 0 549
ENSMUST00000135712 Rnpc3-007 processed_transcript Mus_musculus 0 379
ENSMUST00000132220 Rnpc3-008 processed_transcript Mus_musculus 0 351

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