C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Sjogren syndrome/scleroderma autoantigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533115 SSSCA1-006 ENSG00000173465 9606 + 11:65570603-65572892 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleENST00000533115
Transcript ID Kidney Muscle
ENST00000533115 11.648±0.00 2.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923
CIL_0003XG CIL_0003XG_0002 CGP 11:65570430-65574198

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025885 Sssca1-001 protein_coding Mus_musculus 0 597
ENSMUST00000160852 Sssca1-006 nonsense_mediated_decay Mus_musculus 0 597
ENSMUST00000159693 Sssca1-002 protein_coding Mus_musculus 0 573
ENSMUST00000159008 Sssca1-005 retained_intron Mus_musculus 0 322
ENSMUST00000160141 Sssca1-004 retained_intron Mus_musculus 0 195

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