C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535788 UBB-005 ENSG00000170315 9606 + 17:16381091-16382739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000535788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000535788 251.802±0.00 399.823±0.00 62.282±0.00 372.492±70.51 198.917±91.60 213.733±126.39 162.380±82.14 338.674±2.33 303.917±190.72 283.032±172.83 236.800±25.25 216.524±73.68 568.582±168.76 488.663±120.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058V CIL_00058V_0002 CGP 17:16342534-16382745

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 839
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 675
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 588
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 588
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 580
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 460
ENSMUST00000122457 Gm8648-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 2e-23 113
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 0.0000000004 69

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