C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | CDK5 regulatory subunit associated protein 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000536708  |
CDK5RAP3-010 |
ENSG00000108465 |
9606 | + |
17:47970534-47981772  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007RQ | CIL_0007RQ_0001 | VISTA | 17:47700006-48306250 |
| CIL_0007WA | CIL_0007WA_0001 | VISTA | 17:47751636-48352675 |
| CIL_00097B | CIL_00097B_0001 | VISTA | 17:47849190-48450331 |
| CIL_0004MZ | CIL_0004MZ_0002 | CGP | 17:47951967-47981774 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000079 | ISS | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005515 | IPI | protein binding |
| GO:0007420 | NAS | brain development |
| GO:0016020 | IDA | membrane |
| GO:0019901 | NAS | protein kinase binding |
| GO:0045664 | NAS | regulation of neuron differentiation |
| GO:0045944 | IEA | positive regulation of transcription from RNA polymerase II promoter |
| GO:0071569 | IDA | protein ufmylation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000103152
|
Cdk5rap3-001 | protein_coding | Mus_musculus | 0 | 1722 |
|
ENSMUST00000134732
|
Cdk5rap3-010 | nonsense_mediated_decay | Mus_musculus | 0 | 1301 |
|
ENSMUST00000127048
|
Cdk5rap3-002 | protein_coding | Mus_musculus | 0 | 784 |
|
ENSMUST00000156315
|
Cdk5rap3-005 | protein_coding | Mus_musculus | 0 | 669 |
|
ENSMUST00000144731
|
Cdk5rap3-003 | protein_coding | Mus_musculus | 0 | 604 |
|
ENSMUST00000147573
|
Cdk5rap3-011 | nonsense_mediated_decay | Mus_musculus | 0 | 571 |
|
ENSMUST00000149033
|
Cdk5rap3-008 | retained_intron | Mus_musculus | 0 | 440 |
|
ENSMUST00000130767
|
Cdk5rap3-006 | retained_intron | Mus_musculus | 0 | 422 |
|
ENSMUST00000153305
|
Cdk5rap3-007 | nonsense_mediated_decay | Mus_musculus | 0 | 422 |
|
ENSMUST00000130774
|
Cdk5rap3-004 | protein_coding | Mus_musculus | 3e-16 | 92 |
