C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537393 SOX5-008 ENSG00000134532 9606 - 12:23533683-23949647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverMusclePlacentaENST00000537393
Transcript ID Brain Breast Liver Muscle Placenta
ENST00000537393 1.297±0.00 0.969±0.00 2.186±0.00 0.084±0.00 0.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y0 CIL_0006Y0_0002 CGP 12:22625075-23951032
CIL_0007NR CIL_0007NR_0001 UCNEbase 12:22767069-24538480
CIL_0004XB CIL_0004XB_0001 CGP 12:23529500-24949459

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038815 Sox5-001 protein_coding Mus_musculus 0 3079
ENSMUST00000170367 Sox5-201 protein_coding Mus_musculus 0 1908
ENSMUST00000111749 Sox5-005 protein_coding Mus_musculus 0 1908
ENSMUST00000077160 Sox5-002 protein_coding Mus_musculus 0 1908
ENSMUST00000111748 Sox5-003 protein_coding Mus_musculus 0 1908
ENSMUST00000129050 Sox5-007 retained_intron Mus_musculus 0 1382
ENSMUST00000141102 Sox5-009 retained_intron Mus_musculus 0 953
ENSMUST00000111746 Sox5-004 processed_transcript Mus_musculus 0 815
ENSMUST00000144289 Sox5-013 protein_coding Mus_musculus 0 808
ENSMUST00000142294 Sox5-006 retained_intron Mus_musculus 0 673
ENSMUST00000124233 Sox5-010 protein_coding Mus_musculus 0 662
ENSMUST00000149451 Sox5-008 processed_transcript Mus_musculus 0 473
ENSMUST00000139478 Sox5-012 processed_transcript Mus_musculus 0 436
ENSMUST00000150087 Sox5-011 retained_intron Mus_musculus 0 348
ENSDART00000100998 sox6-201 protein_coding Danio_rerio 0 270
ENSDART00000150068 sox6-001 protein_coding Danio_rerio 0 270
ENSDART00000006737 sox5-201 protein_coding Danio_rerio 1e-35 156
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 2e-33 148

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