C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538239 LRP6-003 ENSG00000070018 9606 - 12:12116029-12244304 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000538239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000538239 1.506±0.00 1.445±0.00 3.754±0.00 1.963±0.54 1.721±0.89 2.207±0.49 0.622±0.03 2.741±1.21 1.673±0.06 2.732±0.74 0.208±0.00 2.685±0.52 1.437±0.50 1.863±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K4 CIL_0000K4_0001 CGP 12:11649854-12211084
CIL_0003HK CIL_0003HK_0001 CGP 12:12049844-12267012
CIL_0006X9 CIL_0006X9_0002 CGP 12:12116025-12350541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032322 Lrp6-001 protein_coding Mus_musculus 0 5860
ENSMUST00000111950 Lrp6-003 protein_coding Mus_musculus 0 2715
ENSMUST00000126836 Lrp6-002 processed_transcript Mus_musculus 0 579

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