C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539977 PABPC1P4-001 ENSG00000255642 9606 + 12:63822021-63823895 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungOvaryPlacentaTestisENST00000539977
Transcript ID Adrenal Brain Colon Liver Lung Ovary Placenta Testis
ENST00000539977 2.003±0.00 0.770±0.15 1.336±0.76 0.614±0.00 0.690±0.00 0.893±0.42 1.204±0.42 4.102±1.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001809 Pabpc1-001 protein_coding Mus_musculus 0 2466
ENSMUST00000063219 Pabpc2-001 protein_coding Mus_musculus 0 1317
ENSMUST00000162696 Gm16580-001 processed_pseudogene Mus_musculus 0 1184
ENSMUST00000156793 Pabpc1-006 processed_transcript Mus_musculus 0 987
ENSMUST00000057190 Pabpc6-201 protein_coding Mus_musculus 0 763
ENSMUST00000146327 Pabpc1-002 processed_transcript Mus_musculus 0 682
ENSMUST00000146577 Pabpc1-003 processed_transcript Mus_musculus 0 492
ENSMUST00000155116 Pabpc1-007 protein_coding Mus_musculus 0 453
ENSMUST00000147116 Pabpc1-004 processed_transcript Mus_musculus 0 388
ENSMUST00000142357 Pabpc1-005 processed_transcript Mus_musculus 0 291
ENSMUST00000119625 Gm11693-001 processed_pseudogene Mus_musculus 3e-16 92

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