C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540235 KRT17-201 ENSG00000128422 9606 - 17:41619443-41624541 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungENST00000540235
Transcript ID Adipose Breast Colon Heart Kidney Lung
ENST00000540235 0.985±0.00 51.345±0.00 0.483±0.41 0.073±0.00 0.158±0.00 8.888±8.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000M CGP 17:41609778-41624842
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 1336
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 1086
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 1022
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 839
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 0 640
ENSMUST00000121423 Gm11597-001 unprocessed_pseudogene Mus_musculus 0 579
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 505
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 459
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 444
ENSMUST00000107411 Krt15-001 protein_coding Mus_musculus 0 440
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 427
ENSMUST00000148502 Krt15-002 retained_intron Mus_musculus 0 331
ENSMUST00000103131 Krt10-001 protein_coding Mus_musculus 0 267
ENSMUST00000128934 Krt13-002 processed_transcript Mus_musculus 0 248

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