C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540871 PSMA6-002 ENSG00000100902 9606 + 14:35278633-35317467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000540871
Transcript ID Testis
ENST00000540871 108.924±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045I CIL_00045I_0001 CGP 14:35122549-35317493
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460
CIL_0001RJ CIL_0001RJ_0001 CGP 14:35278633-35404749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0000502 IDA proteasome complex
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003723 IDA RNA binding
GO:0004175 NAS endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005839 ISS:IEA proteasome core complex
GO:0005844 IDA polysome
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016363 ISS nuclear matrix
GO:0019773 TAS proteasome core complex, alpha-subunit complex
GO:0030016 ISS myofibril
GO:0030017 ISS sarcomere
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0035639 NAS purine ribonucleoside triphosphate binding
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0044281 TAS small molecule metabolic process
GO:0050727 IC regulation of inflammatory response
GO:0051059 IPI NF-kappaB binding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051603 IMP:IEA proteolysis involved in cellular protein catabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021412 Psma6-001 protein_coding Mus_musculus 0 1155
ENSMUST00000163070 Psma6-002 protein_coding Mus_musculus 0 1027
ENSMUST00000162711 Psma6-003 nonsense_mediated_decay Mus_musculus 0 1007
ENSMUST00000162972 Psma6-004 processed_transcript Mus_musculus 0 634

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